COVID Moonshot Sprint 10 for P1 pocket replacement based on x10959 (ADA-UCB-6c2cb422-1) to optimize substituents in the P1 pocket with Mpro dimer and neutral Cys145:His41 catalytic dyad
Rank | Compound | SMILES | ΔG / kcal mol-1 | pIC50 | |
---|---|---|---|---|---|
1 | DAR-DIA-56cf811e-1 | C#CC(=O)N(c1cncc2c1cccc2)C(=O)Cc3cccc(c3)Cl | −13.7 ± 0.2 | 10.0 ± 0.1 | |
2 | TRY-UNI-9f475305-8 | Cc1cc(no1)CN(C(=O)C(C)c2cccc(c2)Cl)C(=O)NC3CC3 | −13.7 ± 0.2 | 10.0 ± 0.2 | |
3 | PET-UNK-12d8d43f-2 | COC(=O)N(c1cncc2c1cccc2)C(=O)Cc3cccc(c3)Cl | −12.8 ± 0.2 | 9.4 ± 0.1 | |
4 | JOH-UNI-a38a7bdd-7 | Cc1ccncc1N(C(=O)Cc2cccc(c2)Cl)C(=O)C3CC3C(F)(F)F | −11.2 ± 0.2 | 8.1 ± 0.1 | |
5 | JIN-POS-6dc588a4-16 | c1cc(cc(c1)Cl)CC(=O)Nc2c3ccncc3on2 | −10.85 ± 0.10 | 7.91 ± 0.07 | |
6 | PET-UNK-a692de38-1 | c1ccc2c(c1)cncc2N(C(=O)Cc3cccc(c3)Cl)NC#N | −10.5 ± 0.2 | 7.6 ± 0.2 | |
7 | EDJ-MED-c8e7a002-13 | c1cc(cc(c1)Cl)CC(=O)Nc2c3c(cccc3F)n[nH]2 | −10.1 ± 0.1 | 7.4 ± 0.1 | |
8 | PET-UNK-1320d94d-29 | CN([C@H](c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3)C(=O)[C@@H]4CCC[C@@H](O4)C(=O)N5CCCC5 | −10.1 ± 0.3 | 7.3 ± 0.2 | |
9 | EDJ-MED-c8e7a002-17 | c1cc(cc(c1)Cl)CC(=O)Nc2c3nnc(n3cnc2Cl)O | −10.05 ± 0.10 | 7.32 ± 0.07 | |
10 | EDJ-MED-c8e7a002-7 | c1cc(cc(c1)Cl)CC(=O)Nc2c3nncn3cnc2Cl | −9.8 ± 0.1 | 7.1 ± 0.1 | |
11 | ALP-POS-3b848b35-4 | c1ccc2c(c1)cncc2NC(=O)C(CCC3CCCCC3)c4cccc(c4)Cl | −9.5 ± 0.2 | 6.9 ± 0.2 | |
12 | DAR-DIA-076fb6ea-5 | c1ccc2c(c1)cncc2N(C#CC#N)C(=O)Cc3cccc(c3)Cl | −9.5 ± 0.5 | 6.9 ± 0.3 | |
13 | PET-UNK-12d8d43f-1 | c1ccc2c(c1)cncc2N(C=O)C(=O)Cc3cccc(c3)Cl | −9.5 ± 0.1 | 6.89 ± 0.09 | |
14 | SAM-UNK-2684b532-3 | Cc1ccncc1NC(=O)C(c2cccc(c2)Cl)c3nnc(s3)C | −9.4 ± 0.1 | 6.86 ± 0.10 | |
15 | PET-UNK-ac320b15-7 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@H](O4)C(=O)N5CCCC5 | −9.3 ± 0.2 | 6.8 ± 0.1 | |
16 | MIC-UNK-d36ab305-4 | CN(C)c1ccc(cc1)C(c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −9.2 ± 0.2 | 6.7 ± 0.1 | |
17 | PET-UNK-5ecb6237-1 | c1ccc2c(c1)cncc2N(C#N)C(=O)Cc3cccc(c3)Cl | −9.2 ± 0.1 | 6.7 ± 0.1 | |
18 | MIC-UNK-c66144cb-1 | c1ccc2c(c1)cncc2NC(=O)C(CCc3cccc(c3)F)c4cccc(c4)Cl | −9.1 ± 0.2 | 6.6 ± 0.2 | |
19 | MIC-UNK-c66144cb-3 | c1ccc2c(c1)cncc2NC(=O)C(CCC3CCCCC3)c4cccc(c4)Cl | −9.1 ± 0.2 | 6.6 ± 0.2 | |
20 | DAR-DIA-076fb6ea-15 | c1ccc2c(c1)cncc2N(C(=O)Cc3cccc(c3)Cl)N=C=S | −9.1 ± 0.2 | 6.6 ± 0.1 | |
21 | JAN-GHE-5a013bed-9 | c1cc(cc(c1)Cl)CC(=O)Nc2cncnc2 | −9.1 ± 0.1 | 6.61 ± 0.09 | |
22 | RUB-POS-1325a9ea-18 | c1ccc2c(c1)cnc(c2NC(=O)Cc3cccc(c3)Cl)F | −9.06 ± 0.04 | 6.60 ± 0.03 | |
23 | PET-UNK-1320d94d-5 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCC5 | −9.0 ± 0.2 | 6.6 ± 0.1 | |
24 | PET-UNK-ac320b15-5 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@H]4CC[C@@H](O4)C(=O)N5CCCC5 | −9.0 ± 0.2 | 6.5 ± 0.1 | |
25 | PET-UNK-1320d94d-9 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CCC[C@@H](O4)C(=O)N5CCCC5 | −9.0 ± 0.2 | 6.5 ± 0.2 | |
26 | PET-UNK-1320d94d-7 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@@H]4C[C@@H](O4)C(=O)N5CCCC5 | −9.0 ± 0.2 | 6.5 ± 0.2 | |
27 | JAN-GHE-5a013bed-4 | c1cc(cc(c1)Cl)CC(=O)Nn2cn[nH]c2=O | −9.0 ± 0.1 | 6.53 ± 0.09 | |
28 | VLA-UNK-dc1d9354-1 | c1ccc2c(c1)[nH]c(=O)n2NC(=O)Cc3cccc(c3)Cl | −9.0 ± 0.2 | 6.5 ± 0.1 | |
29 | JAN-GHE-f4ca5a00-18 | CCCCC(c1cccc(c1)Cl)C(=O)Nn2cncc2C3CC3 | −8.8 ± 0.2 | 6.4 ± 0.1 | |
30 | PET-UNK-6314f867-3 | c1cc(cc(c1)Cl)CC(=O)Nc2cncc3c2c(ccc3)C#N | −8.8 ± 0.1 | 6.43 ± 0.09 | |
31 | EDJ-MED-076d6e64-1 | c1cc(cc(c1)Cl)CC(=O)Nc2cncn3c2nnc3 | −8.8 ± 0.1 | 6.42 ± 0.09 | |
32 | PET-UNK-1320d94d-21 | CN(C)C(=O)[C@H]1CC[C@H](O1)C(=O)N(C)[C@H](c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −8.8 ± 0.2 | 6.4 ± 0.2 | |
33 | TRY-UNI-9f475305-3 | Cc1ccncc1NC(=O)C(c2cccc(c2)Cl)c3nnc(s3)C | −8.8 ± 0.1 | 6.41 ± 0.09 | |
34 | JAN-GHE-f4ca5a00-20 | CCCCC(c1cccc(c1)Cl)C(=O)Nn2c(cnn2)C3CC3 | −8.8 ± 0.2 | 6.4 ± 0.1 | |
35 | ADA-UCB-6c2cb422-11 | COc1ccccc1CO[C@@H](c2cccc(c2)Cl)C(=O)Nc3cc(=O)[nH]c4c3cccc4 | −8.8 ± 0.2 | 6.4 ± 0.2 | |
36 | MAT-POS-7174c657-6 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCCC5 | −8.8 ± 0.2 | 6.4 ± 0.2 | |
37 | DAR-DIA-56cf811e-4 | Cc1ccncc1N(C(=O)Cc2cccc(c2)Cl)C(=O)/C=C/C#N | −8.7 ± 0.2 | 6.4 ± 0.1 | |
38 | JAN-GHE-83b26c96-7 | Cc1c(cncn1)NC(=O)C(c2cccc(c2)Cl)C(C)C | −8.7 ± 0.2 | 6.3 ± 0.1 | |
39 | EDJ-MED-ee07cf00-11 | c1ccc2c(c1)cncc2NC(=O)C(c3cccc(c3)Cl)NC(=O)C4CCC(O4)C(=O)N5CCCC5 | −8.7 ± 0.1 | 6.32 ± 0.09 | |
40 | PET-UNK-1320d94d-24 | CN([C@@H](c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3)C(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCOCC5 | −8.7 ± 0.2 | 6.3 ± 0.2 | |
41 | EDJ-MED-c8e7a002-8 | c1cc(cc(c1)Cl)CC(=O)Nc2c3nnnn3cnc2Cl | −8.6 ± 0.1 | 6.3 ± 0.1 | |
42 | MIC-UNK-5a93dd5f-12 | c1ccc2c(c1)cncc2NC(=O)C(c3cccc(c3)Cl)N4CCC(C4)N5CCCCC5 | −8.63 ± 0.09 | 6.29 ± 0.07 | |
43 | ALP-POS-95b75b4d-6 | c1cc(cc(c1)Cl)CC(=O)Nc2cnccc2O | −8.6 ± 0.1 | 6.27 ± 0.09 | |
44 | MIC-UNK-c66144cb-2 | c1ccc2c(c1)cncc2NC(=O)C(CCc3ccc(cc3)F)c4cccc(c4)Cl | −8.6 ± 0.2 | 6.3 ± 0.1 | |
45 | JAN-GHE-5a013bed-2 | c1ccc2c(c1)ncn2NC(=O)Cc3cccc(c3)Cl | −8.56 ± 0.07 | 6.24 ± 0.05 | |
46 | PET-UNK-1320d94d-26 | CN([C@@H](c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3)C(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCC5 | −8.6 ± 0.2 | 6.2 ± 0.2 | |
47 | VLA-UNK-9a7dc93f-7 | COC(c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3 | −8.53 ± 0.05 | 6.21 ± 0.03 | |
48 | PET-UNK-1320d94d-25 | CN([C@H](c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3)C(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCC5 | −8.5 ± 0.2 | 6.2 ± 0.1 | |
49 | EDJ-MED-97c1bf5c-2 | COc1c(c2nnnn2cn1)NC(=O)Cc3cccc(c3)Cl | −8.4 ± 0.1 | 6.13 ± 0.08 | |
50 | MAT-POS-a13804f0-4 | c1ccc2c(c1)cncc2NC(=O)C(c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCCC5 | −8.38 ± 0.09 | 6.11 ± 0.06 | |
51 | JAN-GHE-f4ca5a00-17 | c1cc(cc(c1)Cl)CC(=O)Nn2c(cnn2)C3CC3 | −8.4 ± 0.1 | 6.10 ± 0.10 | |
52 | VLA-UNK-411a133b-1 | Cn1nc(nn1)NC(=O)Cc2cccc(c2)Cl | −8.4 ± 0.1 | 6.10 ± 0.09 | |
53 | MAT-POS-bb423b95-8 | c1cc(cc(c1)Cl)CC(=O)Nc2cncc3c2ccc(c3)O | −8.4 ± 0.1 | 6.08 ± 0.08 | |
54 | PET-UNK-1320d94d-6 | c1ccc2c(c1)cncc2NC(=O)[C@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCC5 | −8.3 ± 0.2 | 6.1 ± 0.1 | |
55 | MAK-UNK-c749d764-6 | CC(CNCCCO)C(c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3 | −8.3 ± 0.2 | 6.1 ± 0.2 | |
56 | RUB-POS-1325a9ea-17 | c1ccc2c(c1)c(cnc2F)NC(=O)Cc3cccc(c3)Cl | −8.34 ± 0.04 | 6.08 ± 0.03 | |
57 | PET-UNK-ac320b15-9 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@H]4CC[C@H](O4)C(=O)N5CCCC5 | −8.3 ± 0.2 | 6.1 ± 0.1 | |
58 | EDJ-MED-ee07cf00-7 | Cc1c(c(=O)ccn1CC(=O)NC(c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4)O | −8.3 ± 0.2 | 6.0 ± 0.2 | |
59 | PET-UNK-1320d94d-1 | CN(C)C(=O)[C@H]1CC[C@H](O1)C(=O)N[C@H](c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −8.3 ± 0.2 | 6.0 ± 0.1 | |
60 | PET-UNK-1320d94d-2 | CN(C)C(=O)[C@H]1CC[C@H](O1)C(=O)N[C@@H](c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −8.2 ± 0.2 | 6.0 ± 0.2 | |
61 | MIC-UNK-d36ab305-1 | CC(=O)Nc1ccc(cc1)C(c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −8.2 ± 0.2 | 6.0 ± 0.1 | |
62 | MIC-UNK-50cce87d-3 | Cc1cccc2c1c(cnc2)NC(=O)Cc3cccc(c3)Cl | −8.19 ± 0.07 | 5.96 ± 0.05 | |
63 | PET-UNK-1320d94d-3 | c1ccc2c(c1)cncc2NC(=O)[C@@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCOCC5 | −8.2 ± 0.2 | 6.0 ± 0.1 | |
64 | ALP-POS-a9ad2217-2 | CN(C(c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3)C(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCCC5 | −8.1 ± 0.2 | 5.9 ± 0.1 | |
65 | EDJ-MED-ee07cf00-2 | Cc1c(c(=O)n2c(n1)cc[nH]2)CC(=O)NC(c3cccc(c3)Cl)C(=O)Nc4cncc5c4cccc5 | −8.1 ± 0.2 | 5.9 ± 0.1 | |
66 | PET-UNK-ac320b15-8 | c1ccc2c(c1)cncc2NC(=O)[C@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@H](O4)C(=O)N5CCCC5 | −8.1 ± 0.2 | 5.9 ± 0.2 | |
67 | PET-UNK-6314f867-2 | c1cc(cc(c1)Cl)CC(=O)Nc2cncc3c2ccc(c3)C#N | −8.1 ± 0.1 | 5.89 ± 0.09 | |
68 | PET-UNK-1320d94d-27 | CN([C@H](c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3)C(=O)[C@@H]4C[C@@H](O4)C(=O)N5CCCC5 | −8.0 ± 0.2 | 5.9 ± 0.2 | |
69 | MIC-UNK-5a93dd5f-1 | c1ccc2c(c1)cncc2NC(=O)C(c3cccc(c3)Cl)N4CC5CCCC5C4 | −8.0 ± 0.2 | 5.9 ± 0.1 | |
70 | MAT-POS-bfb445d4-2 | c1ccc2c(c1)nnn2NC(=O)Cc3cccc(c3)Cl | −8.00 ± 0.08 | 5.83 ± 0.06 | |
71 | JIN-POS-6dc588a4-17 | c1cc(cc(c1)Cl)CC(=O)Nc2cc3nccn3cn2 | −8.0 ± 0.2 | 5.8 ± 0.1 | |
72 | JOH-UNI-ee5ed7c8-6 | c1ccc2c(c1)cncc2NC(=O)C(CC#N)c3cccc(c3)Cl | −8.0 ± 0.1 | 5.81 ± 0.09 | |
73 | JIN-POS-6dc588a4-11 | c1cc(cc(c1)Cl)CC(=O)Nc2cncc3c2ccc(c3)F | −7.98 ± 0.07 | 5.81 ± 0.05 | |
74 | ALP-POS-3fc1724e-8 | c1ccc2c(c1)[nH]c(n2)NC(=O)C(CCC3CCCCC3)c4cccc(c4)Cl | −8.0 ± 0.3 | 5.8 ± 0.2 | |
75 | EDJ-MED-c8e7a002-1 | COc1ccc2c(c1)onc2NC(=O)Cc3cccc(c3)Cl | −7.9 ± 0.2 | 5.8 ± 0.1 | |
76 | JOH-UNI-3fc3434e-6 | c1ccc2c(c1)cncc2NC(=O)C(CC#N)c3cccc(c3)Cl | −7.9 ± 0.1 | 5.8 ± 0.1 | |
77 | EDJ-MED-00c1612e-1 | COc1ccc2cncc(c2c1)NC(=O)Cc3cccc(c3)Cl | −7.93 ± 0.08 | 5.78 ± 0.06 | |
78 | JOH-UNI-a38a7bdd-1 | c1ccc2c(c1)cncc2N(C(=O)Cc3cccc(c3)Cl)C(=O)C(F)(F)F | −7.9 ± 0.2 | 5.8 ± 0.1 | |
79 | RUB-POS-1325a9ea-4 | Cc1ccc2cncc(c2c1)NC(=O)Cc3cccc(c3)Cl | −7.92 ± 0.07 | 5.77 ± 0.05 | |
80 | NAU-LAT-4ce8bf23-2 | c1ccc2c(c1)cncc2N(CCC(=O)N)C(=O)Cc3cccc(c3)Cl | −7.9 ± 0.2 | 5.8 ± 0.2 | |
81 | PET-UNK-1320d94d-10 | c1ccc2c(c1)cncc2NC(=O)[C@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CCC[C@@H](O4)C(=O)N5CCCC5 | −7.9 ± 0.3 | 5.7 ± 0.2 | |
82 | PET-UNK-ac320b15-10 | c1ccc2c(c1)cncc2NC(=O)[C@H](c3cccc(c3)Cl)NC(=O)[C@H]4CC[C@H](O4)C(=O)N5CCCC5 | −7.9 ± 0.2 | 5.7 ± 0.1 | |
83 | ROB-UNI-daaf9793-3 | c1ccc2c(c1)CC(=CC2=O)NC(=O)Cc3cccc(c3)Cl | −7.9 ± 0.1 | 5.72 ± 0.09 | |
84 | EDJ-MED-ee07cf00-13 | Cc1nc2n(n1)C[C@@H](CC2)C(=O)NC(c3cccc(c3)Cl)C(=O)Nc4cncc5c4cccc5 | −7.9 ± 0.1 | 5.7 ± 0.1 | |
85 | MAK-UNK-c749d764-22 | CC(CNCC1CCCO1)C(c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −7.8 ± 0.1 | 5.7 ± 0.1 | |
86 | MAK-UNK-ffc90da7-4 | CC(CNCC1CCCO1)C(c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −7.8 ± 0.2 | 5.7 ± 0.1 | |
87 | PET-UNK-e8c7a26f-2 | C=CC(=O)N(c1cccnc1)C(=O)Cc2cccc(c2)Cl | −7.8 ± 0.2 | 5.7 ± 0.1 | |
88 | PET-UNK-bbe8d7ff-1 | Cc1ccncc1N(CC=O)C(=O)Cc2cccc(c2)Cl | −7.8 ± 0.2 | 5.7 ± 0.1 | |
89 | JOH-UNI-ee5ed7c8-7 | CN(c1cncc2c1cccc2)C(=O)C(CC#N)c3cccc(c3)Cl | −7.8 ± 0.3 | 5.7 ± 0.2 | |
90 | EDJ-MED-cf4b0d25-3 | c1ccc2c(c1)cncc2NC(=O)C(c3cccc(c3)Cl)NC(=O)[C@@H]4CCCO4 | −7.78 ± 0.07 | 5.67 ± 0.05 | |
91 | PET-UNK-1320d94d-22 | CN(C)C(=O)[C@H]1CC[C@H](O1)C(=O)N(C)[C@@H](c2cccc(c2)Cl)C(=O)Nc3cncc4c3cccc4 | −7.8 ± 0.2 | 5.6 ± 0.1 | |
92 | JAN-GHE-5a013bed-6 | c1cc(cc(c1)Cl)CC(=O)Nc2cnns2 | −7.8 ± 0.1 | 5.65 ± 0.09 | |
93 | RUB-POS-1325a9ea-14 | Cn1c2c(cncc2NC(=O)Cc3cccc(c3)Cl)cn1 | −7.72 ± 0.08 | 5.62 ± 0.06 | |
94 | NAU-LAT-2fed8305-1 | CC(C)(c1cccc(c1)Cl)C(=O)Nc2cncc3c2cccc3 | −7.71 ± 0.05 | 5.62 ± 0.03 | |
95 | JOH-UNI-3fc3434e-7 | CN(c1cncc2c1cccc2)C(=O)C(CC#N)c3cccc(c3)Cl | −7.7 ± 0.2 | 5.6 ± 0.2 | |
96 | MIC-UNK-67d4a29a-4 | CN(c1cncc2c1c(ccc2)OC)C(=O)Cc3cccc(c3)Cl | −7.7 ± 0.3 | 5.6 ± 0.2 | |
97 | MAT-POS-29385cc1-1 | COc1cc2c(cc1F)cncc2NC(=O)Cc3cccc(c3)Cl | −7.7 ± 0.1 | 5.59 ± 0.10 | |
98 | PET-UNK-1320d94d-4 | c1ccc2c(c1)cncc2NC(=O)[C@H](c3cccc(c3)Cl)NC(=O)[C@@H]4CC[C@@H](O4)C(=O)N5CCOCC5 | −7.6 ± 0.3 | 5.6 ± 0.2 | |
99 | JOH-UNI-3fc3434e-3 | c1cc(cc(c1)Cl)CC(=O)Nc2cncc3c2c(ccc3)CC(F)(F)F | −7.6 ± 0.1 | 5.56 ± 0.10 | |
100 | MIC-UNK-5a93dd5f-2 | c1ccc2c(c1)cncc2NC(=O)C(c3cccc(c3)Cl)N4CC5CCCCC5C4 | −7.6 ± 0.1 | 5.56 ± 0.10 |